Protein Unfolding and the Diffusion Collision Model

Beck, Chris; Siemens, Xavier
Bibliographical reference

eprint arXiv:cond-mat/0011024

Advertised on:
11
2000
Number of authors
2
IAC number of authors
0
Citations
0
Refereed citations
0
Description
In the diffusion-collision model, the unfolding or backward rates are given by the likelihood of secondary structural cluster dissociation. In this work, we introduce a backward rate calculation modeled from a Kramers-type thermal tunneling through a barrier, which represents the free energy potential well for buried hydrophobic residues. Our results are in good agreement with currently accepted values and the approach suggests a link between the diffusion-collision and folding funnel models of protein folding.